# MPD basics

*Microbial process development* is an activity within [bioprocess engineering](https://en.wikipedia.org/wiki/Biochemical_engineering). Microbial process development results in a [Bioprocess](/mpd/encyclopedia/bioprocess.md) that, in turn, results in a [Bioproduct](/mpd/encyclopedia/bioproduct.md).

<img src="/files/mVzzpx5WgGixxJ8ZB2QZ" alt="Terminology surrounding microbial process development." class="gitbook-drawing">

## Components in microbial process development

Microbial process development is a complex activity that consists of several components. Below, we give a brief (and incomplete) overview.

### Strain development

Selection or engineering of a microbial host. E.g., *E. coli*, *Saccharomyces cerevisiae*, et&#x63;*.* This includes genetic modifications such as:

* Pathway insertion or optimization
* Knockouts to reduce byproducts
* Promoter tuning for expression control

### Media and growth optimization

Designing nutrient composition. E.g., carbon, nitrogen, trace elements.

Controlling process parameters. E.g., pH, temperature, oxygen transfer.

### Feeding strategy

Batch, fed-batch, or continuous cultivation strategies. Feeding profiles. E.g., glucose-limited feeding to avoid overflow metabolism.

Bioreactor configuration and mixing.

### Scaling

Scale from lab to pilot to production facilities. In practice, to transition from shake flasks to bench-top bioreactors to industrial fermenters.

While scaling, you must address several new challenges. E.g., oxygen transfer limitations, shear stress, heat removal.

### Monitoring

Understand what's going during the bioprocess.

* OD (optical density)
* pH
* DO (dissolved oxygen)
* Metabolites
* Plate counts (CFU)
* BactoBox® (cells/mL)
* etc.

### Downstream considerations

This is a huge topic on its own. The basics are:

* Bioproduct isolation (recovery)
* Bioproduct concentration, purification, dehydration, etc.


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.sbtinstruments.com/mpd/encyclopedia/mpd-basics.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
