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MPD basics

The bridge between biology and manufacturing

Microbial process development is an activity within bioprocess engineering. Microbial process development results in a Bioprocess that, in turn, results in a Bioproduct.

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Terminology surrounding microbial process development.

Components in microbial process development

Microbial process development is a complex activity that consists of several components. Below, we give a brief (and incomplete) overview.

Strain development

Selection or engineering of a microbial host. E.g., E. coli, Saccharomyces cerevisiae, etc. This includes genetic modifications such as:

  • Pathway insertion or optimization

  • Knockouts to reduce byproducts

  • Promoter tuning for expression control

Media and growth optimization

Designing nutrient composition. E.g., carbon, nitrogen, trace elements.

Controlling process parameters. E.g., pH, temperature, oxygen transfer.

Feeding strategy

Batch, fed-batch, or continuous cultivation strategies. Feeding profiles. E.g., glucose-limited feeding to avoid overflow metabolism.

Bioreactor configuration and mixing.

Scaling

Scale from lab to pilot to production facilities. In practice, to transition from shake flasks to bench-top bioreactors to industrial fermenters.

While scaling, you must address several new challenges. E.g., oxygen transfer limitations, shear stress, heat removal.

Monitoring

Understand what's going during the bioprocess.

  • OD (optical density)

  • pH

  • DO (dissolved oxygen)

  • Metabolites

  • Plate counts (CFU)

  • BactoBox® (cells/mL)

  • etc.

Downstream considerations

This is a huge topic on its own. The basics are:

  • Bioproduct isolation (recovery)

  • Bioproduct concentration, purification, dehydration, etc.

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