> For the complete documentation index, see [llms.txt](https://help.sbtinstruments.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.sbtinstruments.com/software/miscellaneous/pilus.md).

# Pilus

*Pilus* is an open-source Python package that turns your BactoBox® data files into something you can load, analyze, and plot. It reads the binary formats your BactoBox® produces — [BDR file](/software/file-formats/bdr-file.md) and [IQS file](/software/file-formats/iqs-file.md) — and converts them to friendlier formats such as *summary.csv*.

{% hint style="info" %}

## Advanced feature 🧩

This is an advanced feature. We only support advanced features through a *custom solution*. Contact SBT for details.
{% endhint %}

## Install

*Pilus* uses [`uv`](https://docs.astral.sh/uv/) to manage dependencies. Once you have `uv`, install *Pilus* and its dependencies:

```shell
uv sync --all-extras
```

## Convert a BDR file to CSV

```shell
uv run pilus convert measure-bb2221028-A02.bdr measure-bb2221028-A02.csv
```

{% hint style="info" %}
Find the source code, full instructions, and more examples on [GitHub](https://github.com/sbtinstruments/pilus). *Pilus* is released under the [MIT License](https://opensource.org/license/mit).
{% endhint %}


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.sbtinstruments.com/software/miscellaneous/pilus.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
