> For the complete documentation index, see [llms.txt](https://help.sbtinstruments.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.sbtinstruments.com/technical-documentation/gating/inactivated-bacteria/inactivation-by-autoclaving.md).

# Inactivation by autoclaving

An autoclave inactivates cells by heat and pressure. It is a much more aggressive treatment than heat alone. A cell will completely disintegrate into tiny pieces after autoclave treatment. As discussed in [Cell size range](/technical-documentation/measurements-explained/cell-size-range.md) BactoBox® detects objects with a sphere-equivalent diameter of 0.5–5.0 µm and therefore the debris is most likely not detectable by BactoBox® measurements.

When a culture is autoclaved, there may still be a few cell-like objects left, but the concentration will be reduced by more than three orders of magnitude. Whatever objects may remain constitute a negligible fraction of the initial cell population.

Custom gating is not meaningful for autoclaved bacteria. Gating cannot recover what is not detected.

<div data-with-frame="true"><figure><img src="https://1559892669-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FHvoombw1JBsKTJTfYyuJ%2Fuploads%2FZqynRjYXSfRykdbHrh4a%2Fautoclave.png?alt=media" alt=""><figcaption><p>Autoclaving disintegrates cells. The dashed circle represents the smallest object BactoBox® counts.</p></figcaption></figure></div>

{% hint style="info" %}

## Does [BacTotal-10](/technical-documentation/gating/bactotal-10.md) count autoclaved bacteria as cells?

Autoclave treatment causes most bacteria to disintegrate to debris. Usually, the debris becomes smaller than the [\~0.5 µm limit](/technical-documentation/measurements-explained/cell-size-range.md). The debris is too small to be detected by BactoBox®.

There are a few exceptions to this. For example, thermophilic bacteria and endospores have some tolerance to autoclave processes.
{% endhint %}

## Summary

When cells are autoclaved they mostly disintegrate to tiny pieces that are rarely detectable by BactoBox®.


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